Antigen

Antigen Class

TFs and others

Antigen

Smarcc1

Cell type

Cell type Class

Others

Cell type

Tumor

NA

NA

Sample

source_name

mouse tumor

genotype

SS18-SSX+

chip antibody

Baf155

strain

C57BL/6

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

mm10

Number of total reads

31411646

Reads aligned (%)

98.2

Duplicates removed (%)

30.1

Number of peaks

177 (qval < 1E-05)

mm9

Number of total reads

31411646

Reads aligned (%)

98.1

Duplicates removed (%)

30.6

Number of peaks

172 (qval < 1E-05)